Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs10774445 | chr12:6850528 | C/G | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs10849503 | chr12:6850713 | T/C | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs10849505 | chr12:6850916 | T/C | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs10892 | chr2:242167163 | G/C | 9.8E-5 | 63 | 66.1 | 17.32 | 77.83 | KM Plot |
| KICH | rs1090818 | chr2:31896604 | C/T | 1.34E-13 | 63 | 10.83 | 75.97 | 63.23 | KM Plot |
| KICH | rs1090819 | chr2:31895830 | T/A | 1.34E-13 | 63 | 10.83 | 75.97 | 63.23 | KM Plot |
| KICH | rs10994248 | chr10:61954581 | G/T | 7.62E-7 | 63 | 64.83 | 66.1 | 16.9 | KM Plot |
| KICH | rs11064339 | chr12:6847418 | G/A | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs11064340 | chr12:6847681 | G/A | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs11064344 | chr12:6847985 | T/G | 7.29E-7 | 64 | 66.78 | 50.67 | 16.9 | KM Plot |
| KICH | rs11064347 | chr12:6849178 | T/C | 7.29E-7 | 64 | 66.78 | 50.67 | 16.9 | KM Plot |
| KICH | rs11064348 | chr12:6849179 | G/A | 7.29E-7 | 64 | 66.78 | 50.67 | 16.9 | KM Plot |
| KICH | rs11064350 | chr12:6849355 | C/T | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs11064352 | chr12:6849491 | A/G | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs11161595 | chr1:85776360 | A/T | 8.91E-7 | 64 | 64.83 | 91.73 | 20.75 | KM Plot |